Sequence Alignments (``pyncbitk.objects.seqalign``)
===================================================

.. currentmodule:: pyncbitk.objects.seqalign

.. automodule:: pyncbitk.objects.seqalign

Alignments
----------

.. autoclass:: SeqAlign(Serial)
   :special-members:
   :members:

.. autoclass:: GlobalSeqAlign(SeqAlign)
   :special-members:
   :members:

.. autoclass:: DiagonalSeqAlign(SeqAlign)
   :special-members:
   :members:

.. autoclass:: PartialSeqAlign(SeqAlign)
   :special-members:
   :members:

.. autoclass:: DiscontinuousSeqAlign(SeqAlign)
   :special-members:
   :members:


Segments
--------

.. autoclass:: AlignSegments(Serial)
   :special-members:
   :members:

.. autoclass:: DenseSegments(AlignSegments)
   :special-members:
   :members:

.. autoclass:: DenseSegmentsData(Serial)
   :special-members:
   :members:


Set
---

.. autoclass:: SeqAlignSet(Serial)
   :special-members:
   :members:


Miscellaneous
-------------

.. autoclass:: AlignRow
   :special-members:
   :members:

.. autoclass:: SeqAlignScore
   :special-members:
   :members: