Object Tools (pyncbitk.objtools)

FASTA

FastaReader

An iterative reader over the sequences in a FASTA file.

BLAST Database

DatabaseReader	A reader over the contents of a BLAST database.
DatabaseKeys	A set-like view over the keys of a BLAST database.
DatabaseValues	A set-like view over the values of a BLAST database.
DatabaseWriter	A handle allowing to write sequences to a BLAST database.

Alignment Map

AlignMap	A helper class to handle coordinates of DenseSegments of an alignment.
AlignMapRow	A row and its coordinates in an AlignMap.