Examples

Running BLAST

This section of the documentation shows several examples adapted from real examples, and running with the latest version of the PyHMMER interface.

• My first pairwise BLASTn
  • Getting sequence data
  • Loading data with the NCBI Toolkit
  • Setting up the BLAST query
  • Running the BLAST query
  • Analyzing the BLAST results
• BLAST with the Object Manager
  • The object manager and scopes
  • Efficient BLAST data storage
  • Scoped data queries with BLAST
  • Building complex queries

External resources

The complete reference for the NCBI C++ Toolkit can be found in the NCBI C++ Toolkit book. It describes the concepts behind the Toolkit data model, even though some implementation details may differ between the C++ and Python interfaces.